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1

Crystal structure of an orthologue of the NaChBac voltage-gated sodium channel

Zhang, Xu, Ren, Wenlin, DeCaen, Paul, Yan, Chuangye, Tao, Xiao, Tang, Lin, Wang, Jingjing, Hasegawa, Kazuya, Kumasaka, Takashi, He, Jianhua, Wang, Jiawei, Clapham, David E., Yan, Nieng

Journal:

Year:

2012

Language:

english

File:

PDF, 1.93 MB

english, 2012

2

Multiple zinc ions maintain the open conformation of the catalytic site in the DNA mismatch repair endonuclease MutL from Aquifex aeolicus

Fukui, Kenji, Baba, Seiki, Kumasaka, Takashi, Yano, Takato

Journal:

Year:

2018

Language:

english

File:

PDF, 621 KB

english, 2018

3

ChemInform Abstract: SPring-8 Structural Biology Beamline

Takashi Kumasaka, Nobutaka Shimizu, Seiki Baba, Kazuya Hasegawa, Go Ueno, Masaki Yamamoto

Journal:

Year:

2010

File:

PDF, 15 KB

2010

4

Crystal structure of 3-isopropylmalate dehydrogenase in complex with NAD+ and a designed inhibitor

Eriko Nango, Takashi Yamamoto, Takashi Kumasaka, Tadashi Eguchi

Journal:

Bioorganic & Medicinal Chemistry

Year:

2009

Language:

english

File:

PDF, 518 KB

english, 2009

5

Evaluation of high spatial resolution imaging plate

Masaki Yamamoto, Takashi Kumasaka, Tomoya Uruga, Nobuo Kamiya, Hitoshi Iwasaki, Tatzuo Ueki

Journal:

Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment

Year:

1998

Language:

english

File:

PDF, 187 KB

english, 1998

6

A multiple CCD X-ray detector and its first operation with synchrotron radiation X-ray beam

Masayo Suzuki, Masaki Yamamoto, Takashi Kumasaka, Kazumichi Sato, Hidenori Toyokawa, Ian F. Aries, Paul A Jerram, Tatzuo Ueki

Journal:

Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment

Year:

1999

Language:

english

File:

PDF, 805 KB

english, 1999

7

Structural basis of the substrate subsite and the highly thermal stability of xylanase 10B from Thermotoga maritima MSB8

Ihsanawati, Takashi Kumasaka, Tomonori Kaneko, Chihiro Morokuma, Rie Yatsunami, Takao Sato, Satoshi Nakamura, Nobuo Tanaka

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1.27 MB

english, 2005

8

Structure of 2-deoxy-scyllo-inosose synthase, a key enzyme in the biosynthesis of 2-deoxystreptamine-containing aminoglycoside antibiotics, in complex with a mechanism-based inhibitor and NAD+

Eriko Nango, Takashi Kumasaka, Toshifumi Hirayama, Nobuo Tanaka, Tadashi Eguchi

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 626 KB

english, 2008

9

The 1.3 Å crystal structure of a novel endo-β-1,3-glucanase of glycoside hydrolase family 16 from alkaliphilic Nocardiopsis sp. strain F96

Guntur Fibriansah, Sumiko Masuda, Naoya Koizumi, Satoshi Nakamura, Takashi Kumasaka

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 450 KB

english, 2007

10

Cloning and functional characterization of the copper/zinc superoxide dismutase gene from the heavy-metal-tolerant yeastCryptococcus liquefaciensstrain N6

Shin Kanamasa, Koichiro Sumi, Naho Yamuki, Takashi Kumasaka, Takeshi Miura, Fumiyoshi Abe, Susumu Kajiwara

Journal:

Molecular Genetics and Genomics

Year:

2007

Language:

english

File:

PDF, 436 KB

english, 2007

11

ISC-like [2Fe–2S] ferredoxin (FdxB) dimer fromPseudomonas putidaJCM 20004: structural and electron–nuclear double resonance characterization

Toshio Iwasaki, Reinhard Kappl, Gerhard Bracic, Nobutaka Shimizu, Daijiro Ohmori, Takashi Kumasaka

Journal:

JBIC Journal of Biological Inorganic Chemistry

Year:

2011

Language:

english

File:

PDF, 1.05 MB

english, 2011

12

RIKEN structural genomics beamlines at the SPring-8; high throughput protein crystallography with automated beamline operation

Go Ueno, Hiroyuki Kanda, Raita Hirose, Koh Ida, Takashi Kumasaka, Masaki Yamamoto

Journal:

Journal of Structural and Functional Genomics

Year:

2006

Language:

english

File:

PDF, 405 KB

english, 2006

13

Quantitative analysis of bone trabecular structural change using X-ray bone morphometric analysis: a correlation between structural change and structural parameters

Atsushi Watanabe, Takashi Sakurai, Satsuki Kumasaka, Isamu Kashima

Journal:

Year:

2004

Language:

english

File:

PDF, 502 KB

english, 2004

14

Evaluating two-dimensional skeletal structure parameters using radiological bone morphometric analysis

Kensuke Asa, Satsuki Kumasaka, Takashi Sakurai, Isamu Kashima

Journal:

Year:

2005

Language:

english

File:

PDF, 460 KB

english, 2005

15

Structural insight of human DEAD-box protein rck/p54 into its substrate recognition with conformational changes

Tsutomu Matsui, Keita Hogetsu, Jiro Usukura, Takao Sato, Takashi Kumasaka, Yukihiro Akao, Nobuo Tanaka

Journal:

Year:

2006

Language:

english

File:

PDF, 522 KB

english, 2006

16

Detection of Coxiella burnetii specific DNA in blood samples from Japanese patients with chronic nonspecific symptoms by nested polymerase chain reaction

Kimitoshi Kato, Yasutomo Arashima, Satoshi Asai, Yumiko Furuya, Yoshiya Yoshida, Masato Murakami, Yasuo Takahashi, Kuniki Hayashi, Takashi Katayama, Kazunari Kumasaka, Yasuyuki Arakawa, Kinya Kawano

Journal:

FEMS Immunology & Medical Microbiology

Year:

1998

Language:

english

File:

PDF, 163 KB

english, 1998

17

Peritonitis Associated With Pasteurella multocida: Molecular Evidence of Zoonotic Etiology

Atsushi Satomura, Mitsuru Yanai, Takayuki Fujita, Yasutomo Arashima, Kazunari Kumasaka, Chie Nakane, Ken Ito, Yoshinobu Fuke, Takashi Maruyama, Noriaki Maruyama, Kazuyoshi Okada, Tomohiro Nakayama, Ko

Journal:

Therapeutic Apheresis and Dialysis

Year:

2010

Language:

english

File:

PDF, 160 KB

english, 2010

18

10.1038/35039564

Morikawa, Kosuke, Kunishima, Naoki, Shimada, Yoshimi, Tsuji, Yuji, Sato, Toshihiro, Yamamoto, Masaki, Kumasaka, Takashi, Nakanishi, Shigetada, Jingami, Hisato

Journal:

Year:

2000

Language:

english

File:

PDF, 649 KB

english, 2000

19

10.1038/35066504

Samatey, Fadel A., Imada, Katsumi, Nagashima, Shigehiro, Vonderviszt, Ferenc, Kumasaka, Takashi, Yamamoto, Masaki, Namba, Keiichi

Journal:

Year:

2001

Language:

english

File:

PDF, 687 KB

english, 2001

20

Mechanism of metal activation of human hematopoietic prostaglandin D synthase

Inoue, Tsuyoshi, Irikura, Daisuke, Okazaki, Nobuo, Kinugasa, Shigehiro, Matsumura, Hiroyoshi, Uodome, Nobuko, Yamamoto, Masaki, Kumasaka, Takashi, Miyano, Masashi, Kai, Yasushi

Journal:

Natural Structural Biology

Year:

2003

Language:

english

File:

PDF, 1.08 MB

english, 2003

21

Crystal structures of RsbQ, a stress-response regulator in Bacillus subtilis

Tomonori Kaneko, Nobuo Tanaka, Takashi Kumasaka

Journal:

Protein Science

Year:

2005

Language:

english

File:

PDF, 407 KB

english, 2005

22

Resonance Raman characterization of archaeal and bacterial Rieske protein variants with modified hydrogen bond network around the [2Fe-2S] center

Toshio Iwasaki, Asako Kounosu, Derrick R.J. Kolling, Sangmoon Lhee, Antony R. Crofts, Sergei A. Dikanov, Takuro Uchiyama, Takashi Kumasaka, Hiroyuki Ishikawa, Miwa Kono, Takeo Imai, Akio Urushiyama

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 266 KB

english, 2006

23

Thymic adenocarcinoma with sarcomatoid features characterized by intracaval tumor growth: Report of a case

Toshiji Ishiwata, Mitsuaki Sekiya, Tsutomu Suzuki, Takashi Matsuoka, Toshio Kumasaka, Kazuhisa Takahashi

Journal:

Year:

2010

Language:

english

File:

PDF, 332 KB

english, 2010

24

Glutathione Ethylester, a Novel Protein Refolding Reagent, Enhances both the Efficiency of Refolding and Correct Disulfide Formation

Len Ito, Masaki Okumura, Kohsaku Tao, Yusuke Kasai, Shunsuke Tomita, Akiko Oosuka, Hidetoshi Yamada, Tomohisa Shibano, Kentaro Shiraki, Takashi Kumasaka, Hiroshi Yamaguchi

Journal:

The Protein Journal

Year:

2012

Language:

english

File:

PDF, 221 KB

english, 2012

25

Hypothyroidism changes adrenoceptor- and muscarinic receptor-mediated blood pressure responses

Takeshi Iwata, Hideo Honda, Hitomi Matsuda, Miwa Kondo, Jun Taniguchi, Takashi Miwa, Kenichi Kumasaka, Hiroko Moroe, Yoko Notoya

Journal:

European Journal of Pharmacology

Year:

2005

Language:

english

File:

PDF, 301 KB

english, 2005

26

Glycine amide shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation

Len Ito, Kentaro Shiraki, Masatomo Makino, Kazuya Hasegawa, Takashi Kumasaka

Journal:

Year:

2011

Language:

english

File:

PDF, 691 KB

english, 2011

27

Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants

Shin Muraoka, Fumi Shima, Mitsugu Araki, Tomoko Inoue, Akiko Yoshimoto, Yuichi Ijiri, Nobuaki Seki, Atsuo Tamura, Takashi Kumasaka, Masaki Yamamoto, Tohru Kataoka

Journal:

Year:

2012

Language:

english

File:

PDF, 646 KB

english, 2012

28

Rapid and simple determination of epoxyeicosatrienoic acids in rabbit renal artery by reversed-phase HPLC with fluorescence detection

Hideo Honda, Yoichi Shibusawa, Jun Taniguchi, Hitomi Matsuda, Miwa Kondo, Kenichi Kumasaka, Takashi Miwa, Yoko Notoya, Heisaburo Shindo

Journal:

Vascular Pharmacology

Year:

2005

Language:

english

File:

PDF, 224 KB

english, 2005

29

Detection of Coxiella burnetii specific DNA in blood samples from Japanese patients with chronic nonspecific symptoms by nested polymerase chain reaction

Kimitoshi Kato, Yasutomo Arashima, Satoshi Asai, Yumiko Furuya, Yoshiya Yoshida, Masato Murakami, Yasuo Takahashi, Kuniki Hayashi, Takashi Katayama, Kazunari Kumasaka, Yasuyuki Arakawa, Kinya Kawano

Journal:

FEMS Immunology & Medical Microbiology

Year:

1998

Language:

english

File:

PDF, 166 KB

english, 1998

30

Crystal structure of N-carbamyl-d-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases

Takahisa Nakai, Tomokazu Hasegawa, Eiki Yamashita, Masaki Yamamoto, Takashi Kumasaka, Tatzuo Ueki, Hirokazu Nanba, Yasuhiro Ikenaka, Satomi Takahashi, Mamoru Sato, Tomitake Tsukihara

Journal:

Year:

2000

Language:

english

File:

PDF, 674 KB

english, 2000

31

Trichromatic Concept Optimizes MAD Experiments in Synchrotron X-Ray Crystallography

Takashi Kumasaka, Masaki Yamamoto, Eiki Yamashita, Hideaki Moriyama, Tatzuo Ueki

Journal:

Year:

2002

Language:

english

File:

PDF, 315 KB

english, 2002

32

The Flexible C-Terminal Region of Aspergillus terreus Blasticidin S Deaminase: Identification of Its Functional Roles with Deletion Enzymes

Makoto Kimura, Makio Furuichi, Masaki Yamamoto, Takashi Kumasaka, Hiroshi Mizuno, Masashi Miyano, Isamu Yamaguchi

Journal:

Biochemical and Biophysical Research Communications

Year:

2002

Language:

english

File:

PDF, 196 KB

english, 2002

33

The adoption of a twisted structure of importin-β is essential for the protein-protein interaction required for nuclear transport

Soo Jae Lee, Naoko Imamoto, Hiroaki Sakai, Atsushi Nakagawa, Shingo Kose, Makiko Koike, Masaki Yamamoto, Takashi Kumasaka, Yoshihiro Yoneda, Tomitake Tsukihara

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 754 KB

english, 2000

34

The 1.55 Å resolution structure of Nicotiana alata SF11-RNase associated with gametophytic self-incompatibility

Koh Ida, Shigemi Norioka, Masaki Yamamoto, Takashi Kumasaka, Eiki Yamashita, Ed Newbigin, Adrienne E Clarke, Fumio Sakiyama, Mamoru Sato

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 622 KB

english, 2001

35

Marker-assisted breeding of a lymphocystis disease-resistant Japanese flounder (Paralichthys olivaceus)

Kanako Fuji, Osamu Hasegawa, Kazumitsu Honda, Kiyohiro Kumasaka, Takashi Sakamoto, Nobuaki Okamoto

Journal:

Year:

2007

Language:

english

File:

PDF, 216 KB

english, 2007

36

Structure of Cu/Zn superoxide dismutase from the heavy-metal-tolerant yeast Cryptococcus liquefaciens strain N6

Aik-Hong Teh, Shin Kanamasa, Susumu Kajiwara, Takashi Kumasaka

Journal:

Biochemical and Biophysical Research Communications

Year:

2008

Language:

english

File:

PDF, 1.24 MB

english, 2008

37

Crystal Structures and Enzymatic Properties of a Triamine/Agmatine Aminopropyltransferase from Thermus thermophilus

Mio Ohnuma, Tadashi Ganbe, Yusuke Terui, Masaru Niitsu, Takao Sato, Nobuo Tanaka, Masatada Tamakoshi, Keijiro Samejima, Takashi Kumasaka, Tairo Oshima

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.95 MB

english, 2011

38

A rapid and robust method for selective isotope labeling of proteins

Myat T. Lin, Lindsay J. Sperling, Heather L. Frericks Schmidt, Ming Tang, Rimma I. Samoilova, Takashi Kumasaka, Toshio Iwasaki, Sergei A. Dikanov, Chad M. Rienstra, Robert B. Gennis

Journal:

Year:

2011

Language:

english

File:

PDF, 1.16 MB

english, 2011

39

Structural Analyses of DNA Recognition by the AML1/Runx-1 Runt Domain and Its Allosteric Control by CBFβ

Tahir H. Tahirov, Taiko Inoue-Bungo, Hisayuki Morii, Atsushi Fujikawa, Motoko Sasaki, Kazumi Kimura, Masaaki Shiina, Ko Sato, Takashi Kumasaka, Masaki Yamamoto, Shunsuke Ishii, Kazuhiro Ogata

Journal:

Year:

2001

Language:

english

File:

PDF, 1.39 MB

english, 2001

40

Mechanism of c-Myb–C/EBPβ Cooperation from Separated Sites on a Promoter

Tahir H. Tahirov, Ko Sato, Emi Ichikawa-Iwata, Motoko Sasaki, Taiko Inoue-Bungo, Masaaki Shiina, Kazumi Kimura, Shioka Takata, Atsushi Fujikawa, Hisayuki Morii, Takashi Kumasaka, Masaki Yamamoto, Shun

Journal:

Year:

2002

Language:

english

File:

PDF, 855 KB

english, 2002

41

Crystal structure of lipocalin-type prostaglandin D synthase

Daisuke Irikura, Takashi Kumasaka, Masaki Yamamoto, Osamu Hayaishi, Yoshihiro Urade

Journal:

International Congress Series

Year:

2002

Language:

english

File:

PDF, 116 KB

english, 2002

42

Dissection of Hydrogen Bond Interaction Network around an Iron–Sulfur Cluster by Site-Specific Isotope Labeling of Hyperthermophilic Archaeal Rieske-Type Ferredoxin

Iwasaki, Toshio, Fukazawa, Risako, Miyajima-Nakano, Yoshiharu, Baldansuren, Amgalanbaatar, Matsushita, Shinichi, Lin, Myat T., Gennis, Robert B., Hasegawa, Kazuya, Kumasaka, Takashi, Dikanov, Sergei A

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 2.86 MB

english, 2012

43

Uterine angiosarcoma associated with lymphangioleiomyomatosis in a patient with tuberous sclerosis complex: an autopsy case report with immunohistochemical and genetic analysis

Takuo Hayashi, Kengo Koike, Toshio Kumasaka, Tsuyoshi Saito, Keiko Mitani, Yasuhisa Terao, Daiki Ogishima, Takashi Yao, Satoru Takeda, Kazuhisa Takahashi, Kuniaki Seyama

Journal:

Human Pathology

Year:

2012

Language:

english

File:

PDF, 2.55 MB

english, 2012

44

A novel hairless mouse model for malignant melanoma

Thang, Nguyen Dinh, Yajima, Ichiro, Nakagawa, Kaoru, Tsuzuki, Toyonori, Kumasaka, Mayuko Y., Ohgami, Nobutaka, Ly, Thuy B., Iwamoto, Takashi, Watanabe, Daisuke, Kato, Masashi

Journal:

Journal of Dermatological Science

Year:

2012

Language:

english

File:

PDF, 800 KB

english, 2012

45

Protein encapsulation within synthetic molecular hosts

Fujita, Daishi, Suzuki, Kosuke, Sato, Sota, Yagi-Utsumi, Maho, Yamaguchi, Yoshiki, Mizuno, Nobuhiro, Kumasaka, Takashi, Takata, Masaki, Noda, Masanori, Uchiyama, Susumu, Kato, Koichi, Fujita, Makoto

Journal:

Nature Communications

Year:

2012

Language:

english

File:

PDF, 1.01 MB

english, 2012

46

Achievement of protein micro-crystallography at SPring-8 beamline BL32XU

Hirata, Kunio, Kawano, Yoshiaki, Ueno, Go, Hashimoto, Koichi, Murakami, Hironori, Hasegawa, Kazuya, Hikima, Takaaki, Kumasaka, Takashi, Yamamoto, Masaki

Journal:

Journal of Physics Conference Series

Year:

2013

Language:

english

File:

PDF, 737 KB

english, 2013

47

The 1.48 Å Resolution Crystal Structure of the Homotetrameric Cytidine Deaminase from Mouse ‡

Teh, Aik-Hong, Kimura, Makoto, Yamamoto, Masaki, Tanaka, Nobuo, Yamaguchi, Isamu, Kumasaka, Takashi

Journal:

Year:

2006

Language:

english

File:

PDF, 870 KB

english, 2006

48

A Genome-Wide Association Study Identifies 2 Susceptibility Loci for Crohn's Disease in a Japanese Population

Yamazaki, Keiko, Umeno, Junji, Takahashi, Atsushi, Hirano, Atsushi, Johnson, Todd Andrew, Kumasaka, Natsuhiko, Morizono, Takashi, Hosono, Naoya, Kawaguchi, Takaaki, Takazoe, Masakazu, Yamada, Tetsuhir

Journal:

Gastroenterology

Year:

2013

Language:

english

File:

PDF, 1.58 MB

english, 2013

49

Radiological Morphometric Analysis of the Mandibular Bone Structure after Ovariectomy in Mature Cynomolgus Monkeys

Asai, Hideomi, Kozai, Yusuke, Matsumoto, Yukiko, Kawamata, Ryota, Kumasaka, Satsuki, Sakurai, Takashi, Kashima, Isamu

Journal:

Oral Science International

Year:

2005

Language:

english

File:

PDF, 288 KB

english, 2005

50

A Eukaryotic Molecular Target Candidate of Roxithromycin: Fungal Differentiation as a Sensitive Drug Target Analysis System

ISHII, Akira, KUMASAKA, Mayu, NAGASHIMA, Yuka, NAKAJIMA, Yuichi, KURAMOCHI, Kouji, SUGAWARA, Fumio, NARUKAWA, Megumi, KAMAKURA, Takashi

Journal:

Bioscience Biotechnology and Biochemistry

Year:

2013

Language:

english

File:

PDF, 545 KB

english, 2013

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